YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLT3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.57
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	136	0.64
Transmembrane Helix	137	156	0.93
Cytoplasmic	157	175	0.85
Transmembrane Helix	176	195	0.95
Non-Cytoplasmic	196	202	0.79
Transmembrane Helix	203	222	0.92
Cytoplasmic	223	229	0.84
Transmembrane Helix	230	251	0.93
Non-Cytoplasmic	252	258	0.77
Transmembrane Helix	259	278	0.96
Cytoplasmic	279	296	0.87
Transmembrane Helix	297	319	0.91
Non-Cytoplasmic	320	353	0.92
Transmembrane Helix	354	372	0.93
Cytoplasmic	373	380	0.74
Transmembrane Helix	381	403	0.88
Non-Cytoplasmic	404	411	0.77
Transmembrane Helix	412	433	0.87
Cytoplasmic	434	452	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSRRFTT GLFASITSVK SHSANRPQSI SLIRRNHIDH RLPLIVPSSR RWIIQAARSW  60
   61 DGFDDGAEAE IKKPGAYGYA IGDNEIEGSS SSTVHVIDGE HVKTAEIVIW AAVTAAFGVG 120
  121 NRVMYKLALV PLKEYPFFLA QLSTFGYVAV YYTILYFRYR AGTVTDAMLS VPKSPFLIVG 180
  181 ILEALAAAAG MAAAANLSGP STTVLSQTFL VWQIFFSIIF LGRRYSVNQI LGCTLVALGV 240
  241 IVSVASGSGA AHSLNEAGVL WILLMVLSFL LQGAGTVLKE VIFIDSQRRL KGASLDLFIV 300
  301 NSYGSAFQAI CIALLLPFLS KLWGIPFNQL GTYLKDGAVC FLNNGTITKG CDGAPFLPLL 360
  361 FVIMNIGYNI ALLRLLKISS AVVSCLASTV SVPIAVFLFT MPLPYLGVAS SLPKGFMGGT 420
  421 IILVLGMILY SWTPHGANSS HTDSVIPSPP PT