YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	53	0.86
Non-Cytoplasmic	54	58	0.77
Transmembrane Helix	59	79	0.97
Cytoplasmic	80	99	0.94
Transmembrane Helix	100	121	0.91
Non-Cytoplasmic	122	149	0.73
Transmembrane Helix	150	172	0.85
Cytoplasmic	173	179	0.75
Transmembrane Helix	180	202	0.89
Non-Cytoplasmic	203	220	0.85
Transmembrane Helix	221	240	0.87
Cytoplasmic	241	258	0.86
Transmembrane Helix	259	281	0.92
Non-Cytoplasmic	282	300	0.95
Transmembrane Helix	301	325	0.90
Cytoplasmic	326	353	0.92
Transmembrane Helix	354	374	0.91
Non-Cytoplasmic	375	379	0.78
Transmembrane Helix	380	401	0.88
Cytoplasmic	402	409	0.85
Transmembrane Helix	410	430	0.94
Non-Cytoplasmic	431	452	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDPPRPDPF PVTRLDSDAG ALFVLQSKGE WWHAGFHLTT AIVGPTILTL PYAFRGLGWW  60
   61 LGFVCLTTMG LVTFYAYYLM SKVLDHCEKS GRRHIRFREL AADVLGSGLM FYVVIFIQTA 120
  121 INTGIGIGAI LLAGQCLDIM YSSLFPQGTL KLYEFIAMVT VVMMVLSQLP SFHSLRHINC 180
  181 ASLLLSLGYT FLVVGACINL GLSKNAPKRE YSLEHSDSGK VFSAFTSISI IAAIFGNGIL 240
  241 PEIQATLAPP ATGKMLKGLL LCYSVIFFTF YSAAISGYWV FGNNSSSNIL KNLMPDEGPT 300
  301 LAPIVVIGLA VIFVLLQLFA IGLVYSQVAY EIMEKKSADT TKGIFSKRNL VPRLILRTLY 360
  361 MAFCGFMAAM LPFFGDINAV VGAFGFIPLD FVLPMLLYNM TYKPTRRSFT YWINMTIMVV 420
  421 FTCAGLMGAF SSIRKLVLDA NKFKLFSSEV VD