YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20260160, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	34	0.91
Non-Cytoplasmic	35	51	0.89
Transmembrane Helix	52	75	0.90
Cytoplasmic	76	82	0.89
Transmembrane Helix	83	101	0.94
Non-Cytoplasmic	102	107	0.72
Transmembrane Helix	108	129	0.89
Cytoplasmic	130	140	0.88
Transmembrane Helix	141	164	0.86
Non-Cytoplasmic	165	183	0.92
Transmembrane Helix	184	206	0.92
Cytoplasmic	207	255	0.95
Transmembrane Helix	256	275	0.93
Non-Cytoplasmic	276	298	0.91
Transmembrane Helix	299	320	0.91
Cytoplasmic	321	328	0.87
Transmembrane Helix	329	349	0.90
Non-Cytoplasmic	350	356	0.72
Transmembrane Helix	357	381	0.87
Cytoplasmic	382	395	0.82
Transmembrane Helix	396	417	0.87
Non-Cytoplasmic	418	432	0.81
Transmembrane Helix	433	455	0.88
Cytoplasmic	456	460	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLRRGYPY LELSFVWIIV LSTSLPISSL YPFLYYMIED FGVAKTEKDI GFYAGFVGCS  60
   61 FMLGRALTSV FWGIVADRYG RKPIILLGTI SIAIFNALFG LSSNFWMAIG TRFLLGSFNC 120
  121 LLGTMKAYAS EIFRDEYQAT AMSAVSTAWG IGLIIGPALG GFLAQPADKY PNVFSQESLF 180
  181 GRFRYALPCF TISAFALLVT VLCCFIPETL HNHKLDSLSH DDSYDILEAA SHESSPSTGK 240
  241 AGKNERKASQ SLLKNWPLMS SIIVYCVLCL HDTAYSEIFA LWANSPRKYG GLSYSTNEVG 300
  301 TVLAISGLGL FSFQVFVYPL AEKLLGPVLV TRYAGALMIP IQMSYPFIAG LSGLSLSLML 360
  361 NCASILINVL SVSAITGLLI LQNRAVDQSQ RGAANGIAMT AMSLFKTVGP AGAGILFSWS 420
  421 ERRLNAAFLP GSHMVFFVLN VIVVVGVALT FKPFLTTSRR