YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S40A3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	148	0.83
Transmembrane Helix	149	168	0.63
Non-Cytoplasmic	169	174	0.61
Transmembrane Helix	175	202	0.75
Cytoplasmic	203	214	0.71
Transmembrane Helix	215	237	0.87
Non-Cytoplasmic	238	251	0.71
Transmembrane Helix	252	274	0.90
Cytoplasmic	275	295	0.75
Transmembrane Helix	296	317	0.78
Non-Cytoplasmic	318	325	0.67
Transmembrane Helix	326	347	0.88
Cytoplasmic	348	399	0.83
Transmembrane Helix	400	423	0.80
Non-Cytoplasmic	424	431	0.72
Transmembrane Helix	432	452	0.94
Cytoplasmic	453	462	0.63
Transmembrane Helix	463	483	0.92
Non-Cytoplasmic	484	492	0.66
Transmembrane Helix	493	514	0.84
Cytoplasmic	515	528	0.70
Transmembrane Helix	529	551	0.82
Non-Cytoplasmic	552	557	0.82
Transmembrane Helix	558	580	0.94
Cytoplasmic	581	598	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVSMALVRH SPSFDFLFHF PVDRSRFLSP VAFSSVRYHR FHSCRWLSLR SSPSCSRRLN  60
   61 SFSSRCSITN TDVCHEFVTT DDEIHEDLLT PIEDHSIPIV HLDTNISVTE SLTLLTECTY 120
  121 VDTVLTALPV LSEEEQTVIA ATPAHPEGLY VLYASCLVGN LVEQLWNFAW PSAIAMLYPS 180
  181 LLPVAVMGFV TKLAIIAGGP VVGKFMDYSP RVPTYISLNV IQAAAQVLSA GMIIHAYTVP 240
  241 STSASSILLQ PWFFALLFAG AIDSLCGIAS GVAIERDWVV LLAGINRPIA LAQANAVLHR 300
  301 IDLLCEIAGT MLFGILLSKY DPVTCLKFAA TLMVGSLPTM TALIWLTNKF SSGVLDRPKC 360
  361 SLNSCSAEGS RTNTDSIFDI GMETIKLGWK EYIQQPVLPA SLAYVLLYFN IVLTPGSLMT 420
  421 AFLTQRCVNP SVIGGFSGLC AVMGVAATFL SANLVKRVGI LKAGAVGLFF QASLLAVAVA 480
  481 VYCSSSLSHK SPLFFFLSMI VLSRLGHMSY GVVGAQILQT GIPSSKANLI GATEISVASL 540
  541 AESLMLGVAI AANDASHFGF LAVLSLLSVV AASLIFCRLL RNPTDEQRRL FSFDPLSN