YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BASS3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.75
Transmembrane Helix	110	133	0.82
Non-Cytoplasmic	134	139	0.48
Transmembrane Helix	140	163	0.79
Cytoplasmic	164	170	0.45
Transmembrane Helix	171	190	0.58
Non-Cytoplasmic	191	198	0.62
Transmembrane Helix	199	218	0.91
Cytoplasmic	219	229	0.69
Transmembrane Helix	230	252	0.86
Non-Cytoplasmic	253	265	0.61
Transmembrane Helix	266	285	0.88
Cytoplasmic	286	293	0.67
Transmembrane Helix	294	314	0.90
Non-Cytoplasmic	315	323	0.73
Transmembrane Helix	324	345	0.92
Cytoplasmic	346	359	0.76
Transmembrane Helix	360	380	0.81
Non-Cytoplasmic	381	385	0.79
Transmembrane Helix	386	408	0.91
Cytoplasmic	409	431	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLIASLSLP PPAIQRQSLS EFHNLPAKSQ SFNCQFRSSS SPLSSLHSSS LSNFLDFRLR  60
   61 RRNSGLVPVV ACSTTPFMGR VGLHWRDGNM SLLSFCGGTD VTEKADSSQF WSALLPFVVA 120
  121 LTAVAALSYP PSFTWVSKDL YAPALGGIML SIGIQLSVDD FALAFKRPVP LSVGFVAQYV 180
  181 LKPLLGVLVA NAFGMPRTFY AGFILTCCVA GAQLSSYASS LSKADVAMSI LLTSSTTIAS 240
  241 VIFTPLLSGL LIGSVVPVDA VAMSKSILQV VLVPITLGLV LNTYAKPVVT LLQPVMPFVA 300
  301 MVCTSLCIGS PLSINRSQIL SAEGLGLIVP IVTFHAVAFA LGYWFSKIPG LRQEEEVSRT 360
  361 ISLCTGMQSS TLAGLLASQF LGSSQAVPAA CSVVVMAIMG LCLASFWGNG FRIRDVLSLS 420
  421 TPQSTGYTAE S