YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDTA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGVFVYRL YRALTYGVSP LIHLHIRWRR LRGLEHFSRW PERFGHPSAV RPPGSLIWFH  60
   61 AVSLGEGMAA IPVIRHCNEV KSDLTILMTT TTVSAFEVIK NQLPVGVLHQ FAPLDTPLAI 120
  121 DRFLGHWKPN AIIIMENELW PNLIMAASGL LIPLGLLNAR MSTKSFKRWS SPLLLPLVSL 180
  181 LLSKFSLIAP LSTLQGIRFQ LLHAPPFVIN YSGDLKYVVN KFHVSSGTSE SIRDLKVELA 240
  241 EMKVWIASSL HRGEEEVILG VHNMLLESHP DSVVIIVPRH PHHGQQIAHK LRKDGQSVAL 300
  301 RSQNEKLTPR KTNIYVVDTL GELRELYSVA PIAVIGGSFI PGLTGHNLSE AAAAGCAVIT 360
  361 GCHVGHFSHM VKAMQQANPL SVTQVSTKLE LKEAVDLLLS NPEILETHQR ASKDVYESLS 420
  421 SCIITNIWKL LNLHIFRGKS RNHIECK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.45
Transmembrane Helix	8	27	0.62
Cytoplasmic	28	53	0.48
Transmembrane Helix	54	74	0.58
Non-Cytoplasmic	75	138	0.73
Transmembrane Helix	139	159	0.86
Cytoplasmic	160	172	0.72
Transmembrane Helix	173	192	0.86
Non-Cytoplasmic	193	447	0.85