YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17473588, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.71
Transmembrane Helix	69	83	0.44
Non-Cytoplasmic	84	85	0.35
Transmembrane Helix	86	112	0.62
Cytoplasmic	113	120	0.65
Transmembrane Helix	121	146	0.80
Non-Cytoplasmic	147	192	0.93
Transmembrane Helix	193	214	0.92
Cytoplasmic	215	225	0.84
Transmembrane Helix	226	248	0.87
Non-Cytoplasmic	249	253	0.88
Transmembrane Helix	254	275	0.89
Cytoplasmic	276	283	0.77
Transmembrane Helix	284	302	0.64
Non-Cytoplasmic	303	322	0.54
Transmembrane Helix	323	346	0.86
Cytoplasmic	347	354	0.56
Transmembrane Helix	355	377	0.74
Non-Cytoplasmic	378	397	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDLCIMAHH CCSRFLDLSQ FKGLKGNQVT SCADILSAML LRAIGQKLQM AYGLNARLLG  60
   61 FLKSSRDKVI LPCGDIAALV YLWNPFTIVS CVGLSTSPIE NLAVILALFG AVTRRVPLAA 120
  121 FGLVIATHLS LYPATLTIPI IFLLGYGLDA PPIKLFLQTR SVENEESSTS TVSKQAKLKQ 180
  181 TTHLPFLWKT VAHFLFWVLL WSLYVLILCA LSLNKYGGLE EMFKRTYGFI LSIEDLSPNI 240
  241 GVFWYFFAEV FDFFRNFFLI VLHVNILFML LPLAIRLKHR PCFLAFIYLA ISSILKSYPS 300
  301 VGDSALYLSL WALFVNELLD MKFSFFLFCG YLGISLLSPV MHNLWIWRGT GNANFYFGNA 360
  361 IGYACFQIVF VVESVSAMLN HDRALKRSNS NHREVKS