YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79588733, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTNMKFCN SYFLVDPTKA SFLDLLLLLF SSNLTSARFI DSPPDTLKGF RRSFASRWIL  60
   61 ALAIFLQKVL MLLSKPFAFI GQKLTYWLNL LTANGGFFNL ILNLMSGKLV KPDKSSATYT 120
  121 SFIGCSDRRI ELDEKINVGS IEYKSMLSIM ASKISYESKP YITSVVKNTW KMDLVGNYDF 180
  181 YNAFQESKLT QAFVFKTSST NPDLIVVSFR GTEPFEAADW CTDLDLSWYE MKNVGKVHAG 240
  241 FSRALGLQKD GWPKENISLL HQYAYYTIRQ MLRDKLGRNK NLKYILTGHS LGGALAALFP 300
  301 AILAIHGEDE LLDKLEGIYT FGQPRVGDED FGEFMKGVVK KHGIEYERFV YNNDVVPRVP 360
  361 FDDKYLFSYK HYGPCNSFNS LYKGKVREDA PNANYFNLLW LIPQLLTGLW EFIRSFILQF 420
  421 WKGDEYKENW LMRFVRVVGI VFPGGSNHFP FDYVNSTRLG GLVRPPPTTT PEDKLALIA

Type	Start	End	Confidence
Cytoplasmic	1	57	0.64
Transmembrane Helix	58	78	0.85
Non-Cytoplasmic	79	84	0.81
Transmembrane Helix	85	105	0.87
Cytoplasmic	106	284	0.94
Transmembrane Helix	285	305	0.87
Non-Cytoplasmic	306	399	0.94
Transmembrane Helix	400	418	0.55
Cytoplasmic	419	431	0.53
Transmembrane Helix	432	449	0.40
Non-Cytoplasmic	450	479	0.77