YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21619494
Protein type:	Globular with Signal Peptide
Type Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPPQASAAH QGRGGRSGLL PKGPAMLCRL CWLVSYSLAV LLLGCLLFLR KAAKPAGDPT  60
   61 AHQPFWAPPT PRHSRCPPNH TVSSASLSLP SRHRLFLTYR HCRNFSILLE PSGCSKDTFL 120
  121 LLAIKSQPGH VERRAAIRST WGRVGGWARG RQLKLVFLLG VAGSAPPAQL LAYESREFDD 180
  181 ILQWDFTEDF FNLTLKELHL QRWVVAACPQ AHFMLKGDDD VFVHVPNVLE FLDGWDPAQD 240
  241 LLVGDVIRQA LPNRNTKVKY FIPPSMYRAT HYPPYAGGGG YVMSRATVRR LQAIMEDAEL 300
  301 FPIDDVFVGM CLRRLGLSPM HHAGFKTFGI RRPLDPLDPC LYRGLLLVHR LSPLEMWTMW 360
  361 ALVTDEGLKC AAGPIPQR

Type	Start	End	Confidence
Signal Peptide	1	52	0.37
N-region	1	43
H-region	44	49
C-region	50	52
Cleavage Site	52	53
Non-Cytoplasmic	53	378	0.82