YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37650997
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.84
Transmembrane Helix	33	52	0.92
Cytoplasmic	53	72	0.79
Transmembrane Helix	73	94	0.93
Non-Cytoplasmic	95	103	0.78
Transmembrane Helix	104	125	0.92
Cytoplasmic	126	134	0.68
Transmembrane Helix	135	154	0.88
Non-Cytoplasmic	155	163	0.78
Transmembrane Helix	164	185	0.87
Cytoplasmic	186	297	0.93
Transmembrane Helix	298	317	0.92
Non-Cytoplasmic	318	343	0.85
Transmembrane Helix	344	361	0.92
Cytoplasmic	362	420	0.85
Transmembrane Helix	421	445	0.70
Non-Cytoplasmic	446	446	0.44
Transmembrane Helix	447	470	0.85
Cytoplasmic	471	528	0.97
Transmembrane Helix	529	552	0.91
Non-Cytoplasmic	553	567	0.84
Transmembrane Helix	568	590	0.86
Cytoplasmic	591	993	0.99
Transmembrane Helix	994	1015	0.88
Non-Cytoplasmic	1016	1056	0.90
Transmembrane Helix	1057	1079	0.89
Cytoplasmic	1080	1093	0.79
Transmembrane Helix	1094	1114	0.58
Non-Cytoplasmic	1115	1147	0.67
Transmembrane Helix	1148	1171	0.85
Cytoplasmic	1172	1242	0.78
Transmembrane Helix	1243	1262	0.78
Non-Cytoplasmic	1263	1270	0.62
Transmembrane Helix	1271	1290	0.78
Cytoplasmic	1291	1575	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLAFCGTEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG WGSQSSKVHI  60
   61 HHSTWLHFPG HNLRWILTFI LLFVLVCEIA EGILSDGVTE SRHLHLYMPA GMAFMAAITS 120
  121 VVYYHNIETS NFPKLLIALL IYWTLAFITK TIKFVKFYDH AIGFSQLRFC LTGLLVILYG 180
  181 MLLLVERYVF FKTPREVKPP EDLQDLGVRF LQPFVNLLSK GTYWWMNAFI KTAHKKPIDL 240
  241 RAIGKLPIAM RALTNYQRLC LAFDAQARKD TQSQQGARAI WRALCHAFGR RLVLSSTFRI 300
  301 LADLLGFAGP LCIFGIVDHL GKENHVFQPK TQFLGVYFVS SQEFLGNAYV LAVLLFLALL 360
  361 LQRTFLQASY YVAIETGINL RGAIQTKIYN KIMHLSTSNL SMGEMTAGQI CNLVAIDTNQ 420
  421 LMWFFFLCPN LWAMPVQIIV GVILLYYILG VSALIGAAVI ILLAPVQYFV ATKLSQAQRS 480
  481 TLEYSNERLK QTNEMLRGIK LLKLYAWENI FCSRVEKTRR KEMTSLRAFA VYTSISIFMN 540
  541 TAIPIAAVLI TFVGHVSFFK ESDFSPSVAF ASLSLFHILV TPLFLLSSVV RSTVKALVSV 600
  601 QKLSEFLSSA EIREEQCAPR EPAPQGQAGK YQAVPLKVVN RKRPAREEVR DLLGPLQRLT 660
  661 PSTDGDADNF CVQIIGGFFT WTPDGIPTLS NITIRIPRGQ LTMIVGQVGC GKSSLLLATL 720
  721 GEMQKVSGAV FWNSSLPDSE GEDPSNPERE TAADSDARSR GPVAYASQKP WLLNATVEEN 780
  781 ITFESPFNKQ RYKMVIEACS LQPDIDILPH GDQTQIGERG INLSGGQRQR ISVARALYQH 840
  841 TNVVFLDDPF SALDVHLSDH LMQAGILELL RDDKRTVVLV THKLQYLPHA DWIIAMKDGT 900
  901 IQREGTLKDF QRSECQLFEH WKTLMNRQDQ ELEKETVMER KAPEPSQGLP RAMSSRDGLL 960
  961 LDEDEEEEEA AESEEDDNLS SVLHQRAKIP WRACTKYLSS AGILLLSLLV FSQLLKHMVL1020
 1021 VAIDYWLAKW TDSALVLSPA ARNCSLSQEC ALDQSVYAMV FTVLCSLGIA LCLVTSVTVE1080
 1081 WTGLKVAKRL HRSLLNRIIL APMRFFETTP LGSILNRFSS DCNTIDQHIP STLECLSRST1140
 1141 LLCVSALAVI SYVTPVFLVA LLPLAVVCYF IQKYFRVASR DLQQLDDTTQ LPLLSHFAET1200
 1201 VEGLTTIRAF RYEARFQQKL LEYTDSNNIA SLFLTAANRW LEVRMEYIGA CVVLIAAATS1260
 1261 ISNSLHRELS AGLVGLGLTY ALMVSNYLNW MVRNLADMEI QLGAVKRIHT LLKTEAESYE1320
 1321 GLLAPSLIPK NWPDQGKIQI QNLSVRYDSS LKPVLKHVNA LISPGQKIGI CGRTGSGKSS1380
 1381 FSLAFFRMVD MFEGRIIIDG IDIAKLPLHT LRSRLSIILQ DPVLFSGTIR FNLDPEKKCS1440
 1441 DSTLWEALEI AQLKLVVKAL PGGLDAIITE GGENFSQGQR QLFCLARAFV RKTSIFIMDE1500
 1501 ATASIDMATE NILQKVVMTA FADRTVVTIA HRVHTILSAD LVMVLKRGAI LEFDKPEKLL1560
 1561 SQKDSVFASF VRADK