YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37650995
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.83
Transmembrane Helix	33	52	0.92
Cytoplasmic	53	72	0.77
Transmembrane Helix	73	94	0.93
Non-Cytoplasmic	95	103	0.76
Transmembrane Helix	104	125	0.92
Cytoplasmic	126	134	0.67
Transmembrane Helix	135	154	0.88
Non-Cytoplasmic	155	163	0.77
Transmembrane Helix	164	185	0.86
Cytoplasmic	186	278	0.92
Transmembrane Helix	279	298	0.91
Non-Cytoplasmic	299	324	0.85
Transmembrane Helix	325	342	0.92
Cytoplasmic	343	401	0.85
Transmembrane Helix	402	426	0.70
Non-Cytoplasmic	427	427	0.44
Transmembrane Helix	428	451	0.85
Cytoplasmic	452	509	0.97
Transmembrane Helix	510	533	0.91
Non-Cytoplasmic	534	548	0.84
Transmembrane Helix	549	571	0.86
Cytoplasmic	572	974	0.99
Transmembrane Helix	975	996	0.88
Non-Cytoplasmic	997	1037	0.90
Transmembrane Helix	1038	1060	0.89
Cytoplasmic	1061	1074	0.79
Transmembrane Helix	1075	1095	0.58
Non-Cytoplasmic	1096	1128	0.67
Transmembrane Helix	1129	1152	0.85
Cytoplasmic	1153	1223	0.78
Transmembrane Helix	1224	1243	0.78
Non-Cytoplasmic	1244	1251	0.62
Transmembrane Helix	1252	1271	0.78
Cytoplasmic	1272	1556	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLAFCGTEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG WGSQSSKVHI  60
   61 HHSTWLHFPG HNLRWILTFI LLFVLVCEIA EGILSDGVTE SRHLHLYMPA GMAFMAAITS 120
  121 VVYYHNIETS NFPKLLIALL IYWTLAFITK TIKFVKFYDH AIGFSQLRFC LTGLLVILYG 180
  181 MLLLVEVNVI RVRPFVNLLS KGTYWWMNAF IKTAHKKPID LRAIGKLPIA MRALTNYQRL 240
  241 CLAFDAQARK DTQSQQGARA IWRALCHAFG RRLVLSSTFR ILADLLGFAG PLCIFGIVDH 300
  301 LGKENHVFQP KTQFLGVYFV SSQEFLGNAY VLAVLLFLAL LLQRTFLQAS YYVAIETGIN 360
  361 LRGAIQTKIY NKIMHLSTSN LSMGEMTAGQ ICNLVAIDTN QLMWFFFLCP NLWAMPVQII 420
  421 VGVILLYYIL GVSALIGAAV IILLAPVQYF VATKLSQAQR STLEYSNERL KQTNEMLRGI 480
  481 KLLKLYAWEN IFCSRVEKTR RKEMTSLRAF AVYTSISIFM NTAIPIAAVL ITFVGHVSFF 540
  541 KESDFSPSVA FASLSLFHIL VTPLFLLSSV VRSTVKALVS VQKLSEFLSS AEIREEQCAP 600
  601 REPAPQGQAG KYQAVPLKVV NRKRPAREEV RDLLGPLQRL TPSTDGDADN FCVQIIGGFF 660
  661 TWTPDGIPTL SNITIRIPRG QLTMIVGQVG CGKSSLLLAT LGEMQKVSGA VFWNSSLPDS 720
  721 EGEDPSNPER ETAADSDARS RGPVAYASQK PWLLNATVEE NITFESPFNK QRYKMVIEAC 780
  781 SLQPDIDILP HGDQTQIGER GINLSGGQRQ RISVARALYQ HTNVVFLDDP FSALDVHLSD 840
  841 HLMQAGILEL LRDDKRTVVL VTHKLQYLPH ADWIIAMKDG TIQREGTLKD FQRSECQLFE 900
  901 HWKTLMNRQD QELEKETVME RKAPEPSQGL PRAMSSRDGL LLDEDEEEEE AAESEEDDNL 960
  961 SSVLHQRAKI PWRACTKYLS SAGILLLSLL VFSQLLKHMV LVAIDYWLAK WTDSALVLSP1020
 1021 AARNCSLSQE CALDQSVYAM VFTVLCSLGI ALCLVTSVTV EWTGLKVAKR LHRSLLNRII1080
 1081 LAPMRFFETT PLGSILNRFS SDCNTIDQHI PSTLECLSRS TLLCVSALAV ISYVTPVFLV1140
 1141 ALLPLAVVCY FIQKYFRVAS RDLQQLDDTT QLPLLSHFAE TVEGLTTIRA FRYEARFQQK1200
 1201 LLEYTDSNNI ASLFLTAANR WLEVRMEYIG ACVVLIAAAT SISNSLHREL SAGLVGLGLT1260
 1261 YALMVSNYLN WMVRNLADME IQLGAVKRIH TLLKTEAESY EGLLAPSLIP KNWPDQGKIQ1320
 1321 IQNLSVRYDS SLKPVLKHVN ALISPGQKIG ICGRTGSGKS SFSLAFFRMV DMFEGRIIID1380
 1381 GIDIAKLPLH TLRSRLSIIL QDPVLFSGTI RFNLDPEKKC SDSTLWEALE IAQLKLVVKA1440
 1441 LPGGLDAIIT EGGENFSQGQ RQLFCLARAF VRKTSIFIMD EATASIDMAT ENILQKVVMT1500
 1501 AFADRTVVTI AHRVHTILSA DLVMVLKRGA ILEFDKPEKL LSQKDSVFAS FVRADK