YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29468958
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.73
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	403	0.94
Transmembrane Helix	404	426	0.92
Cytoplasmic	427	445	0.87
Transmembrane Helix	446	466	0.89
Non-Cytoplasmic	467	535	0.73
Transmembrane Helix	536	557	0.88
Cytoplasmic	558	568	0.47
Transmembrane Helix	569	592	0.84
Non-Cytoplasmic	593	639	0.70
Transmembrane Helix	640	659	0.94
Cytoplasmic	660	733	0.93
Transmembrane Helix	734	755	0.79
Non-Cytoplasmic	756	764	0.72
Transmembrane Helix	765	789	0.83
Cytoplasmic	790	833	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSEEM ALCQLFLQSE AAYACVSELG ELGLVQFRDL NPDVNAFQRK FVNEVRRCDE  60
   61 MERKLRYLEK EIKKDGIPML DTGESPEAPQ PREMIDLEAT FEKLENELRE VNQNAEALKR 120
  121 NFLELTELKH ILRKTQVFFD EMADNQNEDE QAQLLGEEGV RASQPGQNLK LGFVAGVILR 180
  181 ERLPAFERML WRACRGNVFL RRAMIETPLE DPTNGDQVHK SVFIIFFQGD QLKTRVKKIC 240
  241 EGFRATLYPC PEAPADRREM AMGVMTRIED LNTVLGQTQD HRHRVLVAAA KNLKNWFVKV 300
  301 RKIKAIYHTL NLFNLDVTQK CLIAECWVPL LDIETIQLAL RRGTERSGSS VPPILNRMQT 360
  361 FENPPTYNRT NKFTKAFQAL IDAYGVASYR EMNPAPYTII TFPFLFAVMF GDLGHGAIMA 420
  421 LFGLWMIRKE KGLAAQKTDN EIWNIFFGGR YIIFLMGVFS MYTGLIYNDI FSKSLNIFGS 480
  481 HWHLSYNKST VMENKFLQLS PKGDYEGAPY PFGMDPIWQV AGANKIIFHN AYKMKISIIF 540
  541 GVIHMIFGVV MSWHNHTYFR NRISLLYEFI PQLVLLLLLF FYMVLLMFIK WIKFAATNDK 600
  601 PYSEACAPSI LITFIDMVLF NTPKPPPENC ETYMFMGQHF IQVLFVLVAV GCIPVMLLAK 660
  661 PLLIMQARKQ ANVQPIAGAT SDAEAGGVSN SGSHGGGGGH EEEEELSEIF IHQSIDTIEY 720
  721 VLGSVSHTAS YLRLWALSLA HAQLAEVLWT MVLSIGLKQE GPVGGIVLTC VFAFWAILTV 780
  781 GILVLMEGLS AFLHTLRLHW VEFQSKFYKG QGYAFQPFSF DAIIENGAAA AEE