YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29468504
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAASPMAS QLKSKFASSL TRGSGLVTPK GISGSPFKIF PSTRKSCFTI KAVQTDKPTY  60
   61 QVIQPLNGDP FIGSLETPVT SSPLIAWYLS NLPAYRTAVN PLLRGVEVGL AHGFLLVGPF 120
  121 VKAGPLRNTE YAGGAGSLAA AGLVVILSMC LTIYGISSFK EGEASTAPAL TLTGRKKVPD 180
  181 QLQTAEGWSK FTGGFFFGGI SGVTWAYFLL YVLDLPYYVK

Type	Start	End	Confidence
Cytoplasmic	1	102	0.85
Transmembrane Helix	103	123	0.62
Non-Cytoplasmic	124	131	0.56
Transmembrane Helix	132	156	0.86
Cytoplasmic	157	190	0.64
Transmembrane Helix	191	213	0.86
Non-Cytoplasmic	214	220	0.62