YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29378331
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALGAMEAL VRLRRLAMDA SVTGAPSSAD ETSTAGEPEQ KGKLDEIKDS IMNEINKLPI  60
   61 WAIILIIAGA LLFLSCCVYC VCRRCCRKRK KKEGKKGLKG AVDLKSVQLL GNSYKEKVQP 120
  121 DLDELPVNME DNEDAESTKS EVKLGKLQFS LDYDFQKGEL SVNVIQAADL PGMDMSGTSD 180
  181 PYVKVYLLPD KKKKYETKVH RKTLNPVFNE SFTFKVPYAE VGSKILTFAV YDFDRFSKHD 240
  241 QIGQVQVPLN SIDLGRVVEE WRDLQSPDTE SEKENKLGDI CFSLRYVPTA GKLTVVILEA 300
  301 KNLKKMDVGG LSDPYVKISL MLNGKRVKKK KTTIKKCTLN PYYNESFTFE VPFEQIQKVT 360
  361 LIVTVVDYDR IGTSEPIGRC VLGCNSSGTE LRHWSDMLAN PRRPIAQWHT LQEVPEKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	59	0.88
Transmembrane Helix	60	82	0.95
Cytoplasmic	83	418	0.92