YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37650596\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.50
Transmembrane Helix	16	39	0.82
Non-Cytoplasmic	40	44	0.41
Transmembrane Helix	45	61	0.52
Cytoplasmic	62	228	0.95
Transmembrane Helix	229	252	0.92
Non-Cytoplasmic	253	261	0.81
Transmembrane Helix	262	287	0.83
Cytoplasmic	288	301	0.82
Transmembrane Helix	302	321	0.90
Non-Cytoplasmic	322	327	0.69
Transmembrane Helix	328	346	0.93
Cytoplasmic	347	355	0.76
Transmembrane Helix	356	377	0.91
Non-Cytoplasmic	378	387	0.81
Transmembrane Helix	388	411	0.89
Cytoplasmic	412	420	0.85
Transmembrane Helix	421	439	0.87
Non-Cytoplasmic	440	447	0.68
Transmembrane Helix	448	467	0.91
Cytoplasmic	468	471	0.89
Transmembrane Helix	472	493	0.85
Non-Cytoplasmic	494	763	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGYYIYCAF SMMIALYVYD NHSAVSLFLL IVLFIFQWLQ CPRKVVITSA LLSVLCVYLL  60
   61 AETNKHNKTV LLAETSSFTG EISSVPHSDG DRLTFKFTVQ NEEVMAFYKL KTLEEKQQLE 120
  121 KLTIHQVCQL AGQLISPSPA RNLHAFDYQQ YLYHQSIHWQ LNVKRLDLVK CQLPTLTPLT 180
  181 YLTFIRQKGI NYIQQNMSDP GAGFMQALIY GERTGIEEES IKRYQQFGLI HLLAISGLHV 240
  241 GLLTAMCFYL LIRIGITRER AITLLLLLLP VYMVLAGGSA SVVRAVFMSM LMLISIKIQR 300
  301 KILLVDSISF AFIAMLLFKP YYLFDVGFQL SFAVSFALIL SSQTILPRFH SSFSQLMVVS 360
  361 AIAQVSSLPL LLYYFYGVSL LSLPLNMVFV PLFSLVILPL CLLILFVRIL LPGVSELLEQ 420
  421 ILHVLLLFCE KLLGFFEWIP ADFVTGKPHI VLFLGMYLCI YALFVALEEG EFFVRYMFLL 480
  481 VALLAAQCMY PYLNPKGTVT MVDVGQGDCF IIELPYRKGV YMIDTGGTVS FPKEPWQKRR 540
  541 SSFDVGEDVL VPFLHSKGIT RVDKMIITHG DYDHAGAAQH LFSQVAVGEL VLGKKAELND 600
  601 VETGLVIAAQ KQSVPVQIVQ QGDSWQEGGV LFQIISPTGF EETSNNRSIV IDAKLGNLRW 660
  661 LFTGDLEKEG EQRILKDFPN LKADVLKVGH HGSKTSTSEE FVQNLNPKVA LVSAGQKNRY 720
  721 GHPHQEILEL LKSYGVYIYR TDEDGGVMYE FTKKSGTFSQ QLP