YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1402889
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKLISPPL SCPWVTSREV IIKGLPRRRR EWMVTKRNRV SAVTAMIVEP LSVVSSSAIQ  60
   61 IHQWWEQNPN SLLLMTEATG GYSLASYYTS LGLFVISVPG LWSLIKRSVK SKIVRKTFVV 120
  121 NDVKKEPKQV AGEILSFFTR KNFNITDRGE TITGVYYWKK ASRKEEIKVK MMVGSKGRLD 180
  181 EIVVQGDDVQ VEEMRKELQL NEKGMVYVKG LFERSS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	62	0.91
Non-Cytoplasmic	63	83	0.93
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	216	0.99