YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27948827
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.87
Transmembrane Helix	53	72	0.71
Non-Cytoplasmic	73	142	0.57
Transmembrane Helix	143	164	0.73
Cytoplasmic	165	180	0.53
Transmembrane Helix	181	200	0.68
Non-Cytoplasmic	201	292	0.86
Transmembrane Helix	293	316	0.79
Cytoplasmic	317	331	0.90
Transmembrane Helix	332	353	0.92
Non-Cytoplasmic	354	367	0.85
Transmembrane Helix	368	387	0.91
Cytoplasmic	388	441	0.92
Transmembrane Helix	442	461	0.81
Non-Cytoplasmic	462	467	0.79
Transmembrane Helix	468	489	0.91
Cytoplasmic	490	498	0.80
Transmembrane Helix	499	520	0.89
Non-Cytoplasmic	521	534	0.87
Transmembrane Helix	535	559	0.87
Cytoplasmic	560	574	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLKYLLPLV DVEHLDSRLI PRVVKSKKGD ELEGRATKVI ASAGKSLWGT LEFKFYYAVF  60
   61 ILVVPQMFLA GYRASSSDNE NYYKYQHLLS DGWILGRKVD NSDAQYRFFR DHFWLLVAIV 120
  121 PVHVVVKRCI LQATNVSKFK FDALLGGLVL FGAHGVNSLR ILTHIAIMYS IVHLFKRWRK 180
  181 VATVLTWVYG ISTLFINDNF RTYPIGQIWS VLAPLDTMNR GIIERWDVFF NFSLLRMISY 240
  241 NLDYLTRYEL LTKGDVTPNS KKNDDSDNEE LLYNDKARMD AILPIEDYSV VNYLAYMIYT 300
  301 PLFIAGPIMT FNDYVFQSKR TLPSIKKPFI VWYAIRFAFT VLFMELILHF FYVVAISKTK 360
  361 AWDNDSPFEI SMIGLINLNI IWFKLMIPWR LFRLWALLDG VDTPENMIRC VDNNYSALAF 420
  421 WRAWHRSYNK WVVRYIYIPL GGSKNRVLTS LAVFSFVAVW HDIELKLLLW GWMIVLFLLP 480
  481 EMFASRYFAQ FKDKAWYRHI CALGGAVNIW LMMIANLFGF CLGSDGTKKL LTSMFATWSG 540
  541 FLFVLLSFMS LFVGVQIMFE IREEEKRKGI DLKC