YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37606176
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.63
Transmembrane Helix	5	23	0.43
Non-Cytoplasmic	24	39	0.47
Transmembrane Helix	40	61	0.78
Cytoplasmic	62	70	0.54
Transmembrane Helix	71	92	0.85
Non-Cytoplasmic	93	145	0.59
Transmembrane Helix	146	169	0.87
Cytoplasmic	170	218	0.96
Transmembrane Helix	219	241	0.82
Non-Cytoplasmic	242	257	0.89
Transmembrane Helix	258	280	0.92
Cytoplasmic	281	414	0.98
Transmembrane Helix	415	433	0.94
Non-Cytoplasmic	434	476	0.75
Transmembrane Helix	477	497	0.58
Cytoplasmic	498	541	0.72
Transmembrane Helix	542	564	0.87
Non-Cytoplasmic	565	608	0.78
Transmembrane Helix	609	634	0.78
Cytoplasmic	635	721	0.82
Transmembrane Helix	722	744	0.86
Non-Cytoplasmic	745	762	0.71
Transmembrane Helix	763	784	0.65
Cytoplasmic	785	793	0.53
Transmembrane Helix	794	816	0.83
Non-Cytoplasmic	817	848	0.58
Transmembrane Helix	849	876	0.67
Cytoplasmic	877	920	0.71
Transmembrane Helix	921	944	0.75
Non-Cytoplasmic	945	966	0.75
Transmembrane Helix	967	993	0.85
Cytoplasmic	994	1043	0.75
Transmembrane Helix	1044	1063	0.86
Non-Cytoplasmic	1064	1074	0.64
Transmembrane Helix	1075	1098	0.81
Cytoplasmic	1099	1107	0.65
Transmembrane Helix	1108	1126	0.66
Non-Cytoplasmic	1127	1172	0.77
Transmembrane Helix	1173	1192	0.94
Cytoplasmic	1193	1263	0.80
Transmembrane Helix	1264	1288	0.88
Non-Cytoplasmic	1289	1798	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFDIFILLAI FANCVALGVS KPFPEDDSNA TNHDLEQVEY VFLIIFTIET FLKILAYGLV  60
   61 MHPSSYIRNG WNLLDFVIVI VGLFSVVLET VTHKSGETTS HTPGKPGGLD VKALRAFRVL 120
  121 RPLRLVSGVP SLQIVLNSIM KAMVPLLHIS LLVLFVIIIY AIIGLELFIG RMHRTCFYIG 180
  181 TDNYADDDPL PCAFAGHGRQ CYVNGSECRG KWEGPNGGIT NFDNFFFAML TVFQCITMEG 240
  241 WTDVLYWMND AIGFELPWVY FVSLVIFGSF FVLNLVLGVL SGEFSKEREK AKARGDFQKL 300
  301 REKQQMEEDL CGYMDWITQA EDIDEFDEDG NRRVTLRDLA DKKRGKFGWF SHSNETHASL 360
  361 PASETASENT ENIDEEHTDC CAACCARIMK IPCCRALRRW NRCIRRNCRT AVKSVTFYWL 420
  421 VLILVFLNTA LSASEHYNQP EWLTDVQDIA NKVLLSLFTV EMLLKMYSLG LQVYFVAFFN 480
  481 RFDCFVVCGG ILETVLVEME IMPPLGISVL RCVRLLRIFK VTRHWTALSN LVASLLNSMK 540
  541 SIASLLLLLF LFLIIFALLG MQLFGGKFNF DETQTKRSTF DSFPQALLTC FQILTGEDWN 600
  601 VVMYDGIMAY GGPVFPGMIV CLYFVILFIC DILLNVFLAI AVDNLAGGDG DNKKNEEKKE 660
  661 GEAEPAEEEN GEVKVDMDEE YEEEEEPEEG DDEEKILPIP EGSAFFCLSK TNPIRVGCHT 720
  721 LIHHHIFTNL ILVFIILSSI SLAAEDPIRA HSFRNNVLGY ADYAFTSIFT VEILLKMTVH 780
  781 GAFLHEGSFC RNWFNLLDLL VVSVSLVSFF LHSSAISVVK ILRVLRVLRP LRAINRAKGL 840
  841 KHVVQCVFVA IRTIGNIMIV TTLLQFMFAC IGVQLFKGKF YRCTDEAKNT PEQCKGTFVV 900
  901 YKDGDVSHPM VRERIWLNSD FNFDNVLMGM MALFTVSTFE GWPALLYKAI DANGENHGPI 960
  961 YNYRVEISIF FIVYIIIIAF FMMNIFVGFV IITFREQGEA EFKNCELDKN QRQCVEYALK1020
 1021 AQPLKLYIPK NPVQYKFWSI INSTGFEYVM FVLILLNTVT LAVQHYDQSK FFSQVMDILN1080
 1081 MVFTGLFTVE MIIKLMALRL RHYFVDAWNS FDALIVVGSV VDIVVTEFSS SEDSSRVSIT1140
 1141 FFRLFRVMRL VKLLSKGEGI RTLLWTFVKS LQALPYVALL IAMIFFIYAV IGMQTFGKIA1200
 1201 MQDHTQINRN NNFQTFPQAV LLLFRCATGE AWQEIMLASL PGKRCDAESD FEPGEEFSCG1260
 1261 SNIAIVYFIS FFMLCAFLII NLFVAVIMDN FDYLTRDWSI LGPHHLDEFK RIWSEYDPEA1320
 1321 KGRIKHLDVV ALLRRIQPPL GFGKLCPHRV ACKRLVAMNM PLNADGTVTF NATLFALVRT1380
 1381 ALKIKTDGNP DQENEELRII IKKIWKRTKP KVLDEVIPPP AEEEVTVGKF YATFLIQDYF1440
 1441 RKFRKRKEKV GLEEEGNGNP TALQAGLRTL QELGPEMRLN ENGYAHTEPL SRSRRSSLAT1500
 1501 TPIGAPVPVP GDGILNGGLG RRSSLAKTPN GNGALENENF RRRDSMRSSI HYQHKNGRKA1560
 1561 SFNIQCLRRQ GSSDDLPIPG TYHQNSPPCR ARSQGYSSYD SRRSSARSST GSTASWANTG1620
 1621 PRRGRLLYAP LILVEEEGAA GAGGVGIWDK KPGGVGVPAS VRHPGSGWYS GPSAGGGGQP1680
 1681 YRAYTTLRVP TQLSPHYSEK RGSADSLVEA VLISEGLGLY AKDPKFVAFA KREIADACHM1740
 1741 TIDEMESAAS DLLNRGGSEK SQKFMNHTDT GLVYSDEEPI KSHEEEELAD EMTCVTSF