YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23620503
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLDSEPGS VLNVVSTALN DTVEFYRWTW SIADKRVENW PLMRSPWPTL SISTLYLLFV  60
   61 WLGPKWMKDR EPFQMRLVLI IYNFGMVLLN LFIFRELFMG SYNAGYSYIC QSVDYSNNVH 120
  121 EVRIAAALWW YFVSKGVEYL DTVFFILRKK NNQVSFLHVY HHCTMFTLWW IGIKWVAGGQ 180
  181 AFFGAQLNSF IHVIMYSYYG LTAFGPWIQK YLWWKRYLTM LQLIQFHVTI GHTALSLYTD 240
  241 CPFPKWMHWA LIAYAISFIF LFLNFYIRTY KEPKKPKAGK TAMNGISANG VSKSEKQLMI 300
  301 ENGKKQKNGK AKGD

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.51
Transmembrane Helix	45	64	0.83
Cytoplasmic	65	74	0.51
Transmembrane Helix	75	98	0.83
Non-Cytoplasmic	99	126	0.56
Transmembrane Helix	127	145	0.50
Cytoplasmic	146	155	0.79
Transmembrane Helix	156	177	0.80
Non-Cytoplasmic	178	188	0.66
Transmembrane Helix	189	208	0.84
Cytoplasmic	209	217	0.75
Transmembrane Helix	218	238	0.86
Non-Cytoplasmic	239	245	0.86
Transmembrane Helix	246	267	0.92
Cytoplasmic	268	314	0.98