YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37515358
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKTHPL LKIINNTFID LPTPSNISSW WNFGSLLGIC LIIQIITGLF LAMHYTSDTT  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFIHVGR GIYYGSYTST ETWNIGIILL 120
  121 LTVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGPTL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAAVHLLFL HEKGSNNPTG LNSKADKIPF HPYYTIKDLL GILLLILTLV 240
  241 SLVLFTPDWY GEPGEQITPP PLTPSKHAPP FLKP

Type	Start	End	Confidence
Cytoplasmic	1	30	0.88
Transmembrane Helix	31	54	0.88
Non-Cytoplasmic	55	81	0.84
Transmembrane Helix	82	104	0.87
Cytoplasmic	105	112	0.79
Transmembrane Helix	113	133	0.94
Non-Cytoplasmic	134	142	0.65
Transmembrane Helix	143	166	0.81
Cytoplasmic	167	177	0.77
Transmembrane Helix	178	200	0.93
Non-Cytoplasmic	201	228	0.83
Transmembrane Helix	229	250	0.86
Cytoplasmic	251	274	0.85