YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37359678
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.39
Transmembrane Helix	10	31	0.83
Cytoplasmic	32	139	0.59
Transmembrane Helix	140	160	0.88
Non-Cytoplasmic	161	196	0.80
Transmembrane Helix	197	216	0.92
Cytoplasmic	217	231	0.80
Transmembrane Helix	232	256	0.87
Non-Cytoplasmic	257	327	0.85
Transmembrane Helix	328	347	0.92
Cytoplasmic	348	357	0.74
Transmembrane Helix	358	378	0.92
Non-Cytoplasmic	379	423	0.81
Transmembrane Helix	424	446	0.88
Cytoplasmic	447	457	0.85
Transmembrane Helix	458	479	0.87
Non-Cytoplasmic	480	485	0.83
Transmembrane Helix	486	509	0.87
Cytoplasmic	510	524	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASMTNDQS WFFALALGVS FLKCLLINAY HSTDFEVHRN WLALTHSLPV SQWYYEATSE  60
   61 WTLDYPPLFA WFEYGLSHIA RFFDKEMLVV ENLNYASPAT VLFQRLSVIV TDAVLFYAVK 120
  121 ECCKCLREDK GKDLLEKPSF ILTVLLLWNF GLLIVDHIHF QYNGFLFGIL LLSIARHLQN 180
  181 RHLEGALLFS ILLNLKHIYL YIAPAYGIFL LRCFCFTQSN PDGSLSWRSF SVLRLVALGT 240
  241 IVLSTFAVSI GPFLALGQLP QVLSRLFPFK RGLCHAYWAP NIWALYNIAD KALSILGVKF 300
  301 KLLDMNKLPK ASMTGGLVQE FQHSVLPSVS PLATLICTLL SILPALFKLW HRPNGTRGFL 360
  361 RCLVVCALGS FMFGWHVHEK AILMVILPLS LLAVESREDA RTFLILSITG HYSLFPLLFT 420
  421 TQELPIKLFL MLLFTIFSVT SLKMLFRKGG SLLNPLESMY LLGLIPLELV CEFIYPLTVW 480
  481 QKTFPFLPLM LTSLYCALGV TYAFIRLYIS MLTSSDTAKK VKSQ