YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20306653
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.61
Transmembrane Helix	8	30	0.70
Non-Cytoplasmic	31	441	0.90
Transmembrane Helix	442	463	0.93
Cytoplasmic	464	481	0.93
Transmembrane Helix	482	501	0.94
Non-Cytoplasmic	502	506	0.63
Transmembrane Helix	507	523	0.66
Cytoplasmic	524	531	0.55
Transmembrane Helix	532	555	0.72
Non-Cytoplasmic	556	561	0.56
Transmembrane Helix	562	582	0.78
Cytoplasmic	583	590	0.75
Transmembrane Helix	591	611	0.91
Non-Cytoplasmic	612	616	0.81
Transmembrane Helix	617	639	0.91
Cytoplasmic	640	685	0.53
Transmembrane Helix	686	707	0.84
Non-Cytoplasmic	708	720	0.43
Transmembrane Helix	721	744	0.63
Cytoplasmic	745	786	0.86
Transmembrane Helix	787	807	0.92
Non-Cytoplasmic	808	824	0.61
Transmembrane Helix	825	846	0.75
Cytoplasmic	847	858	0.73
Transmembrane Helix	859	878	0.94
Non-Cytoplasmic	879	891	0.89
Transmembrane Helix	892	915	0.88
Cytoplasmic	916	931	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFFTLGLL IHFVFFASIF DIYFTSPLVH GMTPQFTPLP PPARRLVLFV ADGLRADALY  60
   61 ELDENGNSRA PFIRNIIMHE GSWGISHTRV PTESRPGHVA LIAGFYEDVS AVAKGWKENP 120
  121 VEFDSLFNES KYTWSWGSPD ILPMFAKGAS GDHVYTYSYD AKREDFGAQD ATKLDTWVFD 180
  181 NVKDFFHHAR NNQSLFSKIN EEKIVFFLHL LGIDTNGHAH RPSSRDYKDN IKKVDDGVKE 240
  241 IVSMFNHFYG NDGKTTFIFT SDHGMTDWGS HGAGHPSETL TPLVTWGAGI KYPQRVSAQQ 300
  301 FDDAFLKEWR LENWKRLDVN QADIAPLMTS LIGVPFPLNS VGILPVDYLN NTDLFKAESM 360
  361 FTNAVQILEQ FKVKMTQKKE VTLPFLFTPF KLLSDSKQFN ILRKARSYIK HRKFDEVVSL 420
  421 CKELIHLALK GLSYYHTYDR FFLGVNVVIG FVGWISYASL LIIKSHSNLI KGVSKEVKKP 480
  481 SHLLPCSFVA IGILVAFFLL IQACPWTYYV YGLLPLPIWY AVLREFQVIQ DLVVSVLTYP 540
  541 LSHFVGYLLA FTLGIEVLVL SFFYRYMLTA GLTAFAAWPF LTRLWTRAKM TSLSWTFFSL 600
  601 LLAVFPLMPV VGRKPDISLV MGAGLLVLLL SLCVVTSLMK RKDSFIKEEL LVHLLQVLST 660
  661 VLSMYVVYST QSSLLRKQGL PLMNQIISWA TLASSLVVPL LSSPVLFQRL FSILLSLMST 720
  721 YLLLSTGYEA LFPLVLSCLM FVWINIEQET LQQSGVCCKQ KLTSIQFSYN TDITQFRQLY 780
  781 LDDIRRAFFL VFFLVTAFFG TGNIASINSF DLASVYCFLT VFSPFMMGAL MMWKILIPFV 840
  841 LVMCAFEAVQ LTTQLSSKSL FLIVLVISDI MALHFFFLVK DYGSWLDIGT SISHYVIVMS 900
  901 MTIFLVFLNG LAQLLTTKKL RLCGKPKSHF M