YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|36788028, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMLNNKLIL LLGGMFVPLI IASIVGAILS SKYSMDNSNA TIDNLNARIR GWWGMCIICV  60
   61 LSVIIGPIGS VLLFASMSFF ALREFFTLTP TRRSDHEAMF WCFFIFMPLQ YIAVGIEWYG 120
  121 VFSIFIPVYV FLFLPARIAL AGDTTNFLER TAKIQWGMLV AVFCISHAPA LLMLDIPGYE 180
  181 GENVELLLFL MIVVQMSDVL QYVFGKLFGK HPIVPKLSPN KTVEGFVGGI LVSVLLGMSL 240
  241 YWVTPFSPWE AGLMSLAITL MGFIGGLCMS AIKRDSGIKD FGEMIEGHGG MLDRIDSLCF 300
  301 AAPVFFHLTR YFYT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	30	0.94
Non-Cytoplasmic	31	50	0.89
Transmembrane Helix	51	77	0.88
Cytoplasmic	78	97	0.78
Transmembrane Helix	98	114	0.91
Non-Cytoplasmic	115	120	0.62
Transmembrane Helix	121	141	0.88
Cytoplasmic	142	153	0.85
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	185	0.78
Transmembrane Helix	186	205	0.95
Cytoplasmic	206	224	0.87
Transmembrane Helix	225	244	0.95
Non-Cytoplasmic	245	250	0.87
Transmembrane Helix	251	272	0.92
Cytoplasmic	273	314	0.70