YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37528410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	46	0.79
Transmembrane Helix	47	66	0.93
Cytoplasmic	67	76	0.77
Transmembrane Helix	77	98	0.90
Non-Cytoplasmic	99	105	0.74
Transmembrane Helix	106	126	0.94
Cytoplasmic	127	134	0.83
Transmembrane Helix	135	153	0.94
Non-Cytoplasmic	154	163	0.82
Transmembrane Helix	164	184	0.91
Cytoplasmic	185	195	0.77
Transmembrane Helix	196	216	0.91
Non-Cytoplasmic	217	230	0.78
Transmembrane Helix	231	250	0.94
Cytoplasmic	251	260	0.78
Transmembrane Helix	261	279	0.95
Non-Cytoplasmic	280	284	0.80
Transmembrane Helix	285	303	0.93
Cytoplasmic	304	331	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNHASTQS VNNYSTYIKL SLVAIIWGGT FVAGRYISVE TPPLLSASLR FILAGMTLII  60
   61 FLVLSGKMFV KINLSQLLKI IGLGLSGIYT YNLFFFYGLH HTTASRASLI VALNPAVMAI 120
  121 FSYLFYKERQ SPLKILGIIL CLLGAMIVIF SKTPQLTVGA EGNWLGDTLI FGCVLSWVAY 180
  181 SVFCKNIVNQ IGPLHTVTYS ILAGAIMLTA TAIFTGQMSL SAIHTLPITD LYSLLYLGAV 240
  241 GSAVAYIWYY DGIQRIGSTR SGVFIALNPL TAVLLGAVLL DERLTFPMFI GGALVIGGIL 300
  301 ICNKRSTDKK LIPPEPKSGI NHIAKAKNYR R