YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37527736, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.96
Transmembrane Helix	16	38	0.94
Cytoplasmic	39	56	0.96
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	101	0.96
Transmembrane Helix	102	127	0.88
Cytoplasmic	128	143	0.82
Transmembrane Helix	144	166	0.87
Non-Cytoplasmic	167	190	0.93
Transmembrane Helix	191	213	0.91
Cytoplasmic	214	229	0.90
Transmembrane Helix	230	254	0.90
Non-Cytoplasmic	255	277	0.94
Transmembrane Helix	278	299	0.86
Cytoplasmic	300	310	0.77
Transmembrane Helix	311	335	0.86
Non-Cytoplasmic	336	345	0.82
Transmembrane Helix	346	366	0.93
Cytoplasmic	367	381	0.85
Transmembrane Helix	382	403	0.93
Non-Cytoplasmic	404	417	0.82
Transmembrane Helix	418	440	0.92
Cytoplasmic	441	455	0.90
Transmembrane Helix	456	476	0.94
Non-Cytoplasmic	477	493	0.89
Transmembrane Helix	494	517	0.89
Cytoplasmic	518	588	0.96
Transmembrane Helix	589	615	0.81
Non-Cytoplasmic	616	663	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGKLTLDAI PLHEPIVMVT LAGILFAGLA IVGALTYFRK WKWLWSEWLT SVDHKKIGIM  60
   61 YIIVALVMML RGFADAIMMR GQQAVASAGE AGFLPPHHYD QIFTAHGVIM IFFMATPFVV 120
  121 GLMNIVVPLQ IGARDVAFPF LNSLSFWFFV VGVALINISL GIGEFAQTGW LAYPPLSGIE 180
  181 YSPSVGVDYW IWSLQISGIG TLLTGVNFFA TILRMRAPGM SMMKMPVFSW AALCTNVLII 240
  241 AAFPILTVTI ALLTFDRYMG THFFTNDMGG NMMMYINLIW AWGHPEVYIL VLPVFGVFSE 300
  301 VTATFSKKRL FGYTSLVWAT IAITVLSFIV WLHHFFTMGS GANVNAFFGI ATMIISIPTG 360
  361 VKIFNWLFTM YRGRIEYKTP MLWTVGFIVT FSIGGMTGVL LAVPGANFVL HNSLFLIAHF 420
  421 HNVIIGGVVF GCFAGTAYWF PKAFGFTLNE KWGIRAFWFW ITGFFIAFMP VYALGFMGMT 480
  481 RRISQDINPE FHNLLVVSAI GVALIAVGIL CQVIQFYVSI RDRDQNRDLT GDPWGGRTLE 540
  541 WATSSPPPFY NFADVPHVQT RDAWWDMKEK GTAYKRPAKY EEIHMPKNAG AGVIIAGFTL 600
  601 LFGFAMIWHI WWLAIASFAG MIITWIAKSF DEDVDYYVPV AEVEQIENQH HEQISKAGLN 660
  661 HVN