YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|36785765, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYLSLYGLF LAKVVTLVLA IIALAILGIG IGMRKSSLKG ELKLVDLGES YRDKQRQMQR  60
   61 ARMTEAEGKI WQKEFNKQQK LESKQKKSDA KTGHKGLQKP CLYVLDFKGS MDAHEVDSLR 120
  121 EEISAILAVA DAKDEVLLRL ESPGGMVHGY GLAASQLARL RQKGIRLTIV VDKVAASGGY 180
  181 MMACVADRVV AAPFAIIGSI GVVAQIPNIH KLLKKNDIDV ELHTAGEYKR TLTVLGENTE 240
  241 QGRKKFQEDL NQTHELFKSF IHTHRPSLDV ESVATGEYWY GSQAKEKGLI DEIGVSDDLL 300
  301 IAQIDNCEVI GVSYTRRKRM VERFTGNAME SIDKLLLRWW QRGEKPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.57
Transmembrane Helix	9	33	0.87
Cytoplasmic	34	188	0.57
Transmembrane Helix	189	204	0.35
Non-Cytoplasmic	205	348	0.58