YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37526084, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.93
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	32	0.90
Transmembrane Helix	33	51	0.94
Non-Cytoplasmic	52	56	0.83
Transmembrane Helix	57	76	0.94
Cytoplasmic	77	86	0.92
Transmembrane Helix	87	108	0.94
Non-Cytoplasmic	109	124	0.87
Transmembrane Helix	125	147	0.89
Cytoplasmic	148	160	0.93
Transmembrane Helix	161	179	0.92
Non-Cytoplasmic	180	185	0.78
Transmembrane Helix	186	207	0.91
Cytoplasmic	208	215	0.77
Transmembrane Helix	216	234	0.91
Non-Cytoplasmic	235	239	0.75
Transmembrane Helix	240	260	0.91
Cytoplasmic	261	462	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGVVTAAY IVAAILFIFS LAGLSRHESS KRGNIFGITG MAIALIATIF GPDTGSVVWV  60
   61 ILAMVIGAVI GIRLANKVEM TEMPELVAIL HSFVGLAAVL VGFNSFIAHD SFAEPVMENI 120
  121 HLTEVFLGVF IGAITFTGSV VAFGKLCGKI SSKPLMLPNR HKLNLAALVI SFVLLITFVK 180
  181 TDSTGLQVFT LLLMTAIALV FGWHLVASIG GADMPVVVSM LNSYSGWAAA AAGFMLSNDL 240
  241 LIVTGALVGS SGAILSYIMC KAMNRSFISV IAGGFGTDGS STGDDQEMGE YRETTAEDVA 300
  301 ELLKNSTSVI ITPGYGMAVA QAQYPVHDIT AKLREKGVNV RFGIHPVAGR LPGHMNVLLA 360
  361 EAKVPYDVVL EMDEINDDFS DTDTVLVIGA NDTVNPAAQE DPNSPIAGMP VLEVWKAQNV 420
  421 VVFKRSMNTG YAGVQNPLFF KDNSQMLFGD AKASVEEILR AL