YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37525778, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLLGYIVV FGAVIGGYLI VGGHLGALYQ PAEFLIITGA GIGAFIVGNN GKAIKATLRV  60
   61 LPKVMRRSKY NKVMYMDLMA LLFRLLAKSR MHGVLALERD IEHPQQSDIF TQYPRLLKDK 120
  121 HLMDFITDYM RLIVSGNMNP HEIEALMDEE IETYEQESEI PATSLMMVGD SLPAFGIVAA 180
  181 VMGVVNALGS ADRPAGELGV LIAHAMVGTF LGILLAYGFI SPLATLLRQR SGEHLKMMQC 240
  241 IKVTLLSSLN GYAPQIAVEF GRKTLYLTDR PSFTELEEHV RRVKAPVQQE TEEQV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.79
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	33	0.77
Transmembrane Helix	34	53	0.92
Cytoplasmic	54	170	0.69
Transmembrane Helix	171	191	0.87
Non-Cytoplasmic	192	199	0.60
Transmembrane Helix	200	221	0.91
Cytoplasmic	222	295	0.60