YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|36783682, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.64
Transmembrane Helix	5	22	0.69
Cytoplasmic	23	52	0.88
Transmembrane Helix	53	74	0.84
Non-Cytoplasmic	75	78	0.73
Transmembrane Helix	79	99	0.90
Cytoplasmic	100	125	0.91
Transmembrane Helix	126	150	0.87
Non-Cytoplasmic	151	161	0.84
Transmembrane Helix	162	182	0.89
Cytoplasmic	183	188	0.90
Transmembrane Helix	189	210	0.94
Non-Cytoplasmic	211	230	0.96
Transmembrane Helix	231	252	0.92
Cytoplasmic	253	268	0.93
Transmembrane Helix	269	291	0.92
Non-Cytoplasmic	292	318	0.93
Transmembrane Helix	319	340	0.90
Cytoplasmic	341	361	0.89
Transmembrane Helix	362	380	0.90
Non-Cytoplasmic	381	389	0.71
Transmembrane Helix	390	411	0.88
Cytoplasmic	412	417	0.84
Transmembrane Helix	418	438	0.95
Non-Cytoplasmic	439	445	0.79
Transmembrane Helix	446	466	0.94
Cytoplasmic	467	484	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFLLCIGL LLAGYFIYGK IVEKIFTIRP ERKTPALSMA DGVDYVAMST PKVWLIQLLN  60
   61 IAGVGPIFGP ILGALYGPLA MLWIVFGCIF AGAVHDYFSG MLSVRARGAS VPVIVGNELG 120
  121 KTMKHFMNIF AVILLMLVGV VFVLSPAGLL NNLLKEAMGW DNIAIWVGVI FAYYILATLV 180
  181 PIDKIIGRLY PLFGALLLFM SVALMVGLAM SDKPFYSQGL DFTTNFNPKD LPIWPLLFVT 240
  241 IACGAISGFH ATQSPLMARC MQNEKNGRFV FYGAMIGEGI IALIWCTLGL SFYEDTNALQ 300
  301 AVIDQGTASL VVHEVSTSLL GTVGGILAIL GVVILPITSG DTAFRSARLI IAEFLNIPQQ 360
  361 QMTKRLLLSV PMFIVGYLIT KTDFNIIWRY FGWANQTTAM VMLWAASAWL LRRNKFHWIT 420
  421 TLPAMFMTAV CFTYLAFAPE GFALNWNISV VIGLAAMAVV TMTFFAKVRS QSASDNIKAK 480
  481 ALNE