YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|36783567, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFDAVIIG AGAAGLFCAA QAGQLGLRIL VLDNGKKAGR KILMSGGGRC NFTNMYTEPS  60
   61 AYLSTNPHFC KSALARYTQW DFIELVQRHG IAHHEKTLGQ LFCDDSAQQI VDMLLKECEA 120
  121 GQVTIRLRSE VSQVEKNEQG FVIIVNGKEV STRSLVIASG GLSMPGLGAT PFGYRIAEQF 180
  181 GMKVLPTRAA LVPFTLHKPL LEQLHMLSGV SVPAIVTAEN GVLFKENILF THRGLSGPAI 240
  241 LQISSYWQSG EFVSINLLPD SDLEALLEKE RSSHPNQSVK NALAKLLPKR LTECLQALGQ 300
  301 IPDIALKQLT PNQQKQLAVN LQSWRVQPNG TEGYRTAEVT MGGIDTHQLS SKTMEANQVK 360
  361 GLYFIGEVVD VTGWLGGYNF QWAWSSAWAC AQAL

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	394	0.96