YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37525177, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCAYPTFCY YAPDVAFFYT TMLYSNRKLR PLNTDVTTFD FKNIKGNFTM THKRYSPSWE  60
   61 SYMGDFLRGN SGINHLKPQY QSFDAIGLEK QLNENTTYIA LLSLEEAKDV LEDIDSPKPK 120
  121 SPFIKKVFSI TDPISPYAGN IRDAFDFANV VGEFKKLGIK ATEYVGKNGQ RYIKISGHAG 180
  181 LRKIINASRY SASNMKMISM GIGQQGINSS IVKGVKFNIL FSSAYRAVEY IFKDEYTLAD 240
  241 FLGNISVDLA KAAVAAFASW VIGTFAATAF ATGASVIVVA GIMLAIGIAT TSILDSIDKN 300
  301 FKISETIINL IKKELERKPK TPEANFNQFL HNWGNYGK

Type	Start	End	Confidence
Cytoplasmic	1	248	0.82
Transmembrane Helix	249	271	0.65
Non-Cytoplasmic	272	272	0.37
Transmembrane Helix	273	294	0.81
Cytoplasmic	295	338	0.73