YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37524835, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIDAILIGL LAGLAGVDLF DGLTHFHRPV VIGPLVGLIL GDVQTGLLVG GTLELVWMGM  60
   61 VPLAGAQPPN VVIGGVIGTA FAILTHADPK VAIGIAVPFS IAVQGCITLL FTLFSPMMHK 120
  121 CDQMVKALNW RGVERVNYLG ITILFCFYFI VAFLPVYFGA DAASVMVQKA PQWLLDGLAV 180
  181 AGGMMPAIGF SMLMKIMMKK SYIAYFILGF ISVTFLNMPI IAVALGAFAI ALIDFFNRSR 240
  241 MEEAAERSVS TTQSHTQSQE MEDGI

Type	Start	End	Confidence
Cytoplasmic	1	5	0.77
Transmembrane Helix	6	25	0.79
Non-Cytoplasmic	26	34	0.62
Transmembrane Helix	35	57	0.80
Cytoplasmic	58	65	0.66
Transmembrane Helix	66	87	0.82
Non-Cytoplasmic	88	92	0.82
Transmembrane Helix	93	115	0.93
Cytoplasmic	116	135	0.91
Transmembrane Helix	136	158	0.92
Non-Cytoplasmic	159	172	0.90
Transmembrane Helix	173	194	0.90
Cytoplasmic	195	204	0.76
Transmembrane Helix	205	231	0.89
Non-Cytoplasmic	232	265	0.94