YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|36784166, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSDGIRGL GMASSDTSSL SSTPSEKILA EAAEWLTILH DSHASEADRN ACAAWCAQSP  60
   61 EHAQAWEHAQ CLLARLHHLP PHIASPLLNN KQPLSRREAI RKLTLMLLIP AGASSLFWRS 120
  121 DQFQLLTGDY HTQTGQIQHW SLPDNSQLTL NTQSSTDVHY DDTQRLISLK LGEIYIETHK 180
  181 DNRHPARPFK VQTKQGVIVA LGTKFSVRQQ ASHAQVEIVE GAVRITPDNG LPHILHAGEA 240
  241 THFTQFTVAP QHTRSITSLS WLQGMMVADN LPLATVVTEL NRYRSGIIRC DDAVAHLRVS 300
  301 GAFPLRDTDL ALHMLLQTYP LSIRRLTRYW ITLTSPS

Type	Start	End	Confidence
Cytoplasmic	1	98	0.67
Transmembrane Helix	99	118	0.61
Non-Cytoplasmic	119	337	0.99