YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21537059
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRSCIVLF FSLFLFVPQK GFSILNTTLL LVPHPDPELV AYQVQWKVNA SITRRQALDT  60
   61 TDQAGSTPCI TGNPIDDCWK CDPNWPNNRQ GLADCGIGFG QYALGGKGGQ FYFVTDSSDD 120
  121 DAVNPKPGTL RYGVIQEEPL WIVFPSNMMI KLKQELIFNS YKTLDGRGAN VHIVGGGCIT 180
  181 LQYVSNIIIH NIHIHHCYQS GNTNVRSSPT HYGFRTKSDG DGISIFGSKD IWIDHCSLSR 240
  241 CKDGLIDAVM GSTGITISNN FFSHHNEVML LGHSDHYEPD SGMQVTIAFN HFGEKLIQRM 300
  301 PRCRRGYIHV VNNDFTQWEM YAIGGSGNPT INSQGNRYTA PTNPFAKEVT KRVETPDGDW 360
  361 KGWNWRSEGD ILVNGAFFVA SGEGAEMRYE KAYSVEPKSA SFITQITFHS GVLGVGGRNN 420
  421 NLGMWTTTGS EGTSGLDSYN DYTDEMSGAG STNRLSFSVL VFLLSSISYL VVFTSSTQMF 480
  481 ML

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	456	0.98
Transmembrane Helix	457	477	0.81
Cytoplasmic	478	482	0.64