YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21537050
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFALTFLNPN PRLPSPLFLA KSTPESALRR SRAFSSSNSY PWRPNLRFNG FKLKSATVPE  60
   61 NVEGGDLESG SLVKGLKLGG MFGVWYLLNI YYNIFNKQVL RVYPYPATVT AFQLGCGTLM 120
  121 IAIMWLLKLH PRPKFSPSQF TVIVQLAVAH TLGNLLTNVS LGRVNVSFTH TIKAMEPFFT 180
  181 VLLSVLLLGE WPSLWIVCSL LPIVAGVSLA SFTEASFNWI GFCSAMASNV TNQSRNVLSK 240
  241 KFMVGKDALD NINLFSIITI ISFILLVPLA ILIDGFKVTP SHLQVATSQG LSVKEFCIMS 300
  301 LLAGVCLHSY QQVSYMILEM VSPVTHSVGN CVKRVVVITS SILFFKTPVS PLNSIGTATA 360
  361 LAGVYLYSRA KRVQVKPNPK MS

Type	Start	End	Confidence
Cytoplasmic	1	74	0.90
Transmembrane Helix	75	95	0.75
Non-Cytoplasmic	96	106	0.70
Transmembrane Helix	107	127	0.93
Cytoplasmic	128	139	0.70
Transmembrane Helix	140	161	0.59
Non-Cytoplasmic	162	169	0.45
Transmembrane Helix	170	189	0.55
Cytoplasmic	190	190	0.42
Transmembrane Helix	191	217	0.72
Non-Cytoplasmic	218	251	0.58
Transmembrane Helix	252	276	0.86
Cytoplasmic	277	290	0.59
Transmembrane Helix	291	311	0.63
Non-Cytoplasmic	312	348	0.76
Transmembrane Helix	349	368	0.75
Cytoplasmic	369	382	0.85