YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRA1H_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSPNPLSL SVPDPAFESW LRDSGYLELL DHRTSAAAAA ASSSASVSSS AAATSAASDD  60
   61 VVSSITGGFF ASLLSRLVTV SSLLTINPFS KLSADDFSGD TTPWTTGFIG NCDSYSFPSS 120
  121 SQQARMRVHE NIKRFARNYA TLFIVFFACA LYQMPLALVG LLGSLALWEL FKYCSDKWKF 180
  181 DRHPSMRKLS IGIGQCATAV LLTFLNVQMA LFSALAISYS VMILHAGFRK LTPSKKPTRG 240
  241 R

Type	Start	End	Confidence
Cytoplasmic	1	134	0.74
Transmembrane Helix	135	161	0.79
Non-Cytoplasmic	162	208	0.70
Transmembrane Helix	209	228	0.89
Cytoplasmic	229	241	0.90