YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21536959
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQNKLMNE TKRHVKSRLC RVSGSMTEMM EIQAENPTFH VLFIPGNPGV VSFYKDFLES  60
   61 LYEFLGGNAS VIAIGQISHT SKDWESGRLF SFQEQIDHKI DFIRQELESV KVPIILVGHS 120
  121 IGSYISLELL KKFSDKVVYC IGLYPFLTLN QQSTKQSLIG KLAASSVLSA TASFLIASLR 180
  181 LLPMSAARLL VSKSIGASWS DTAVQATCTH LRQYHTMRNV LFMAKSEFRE LAAEPDWDFM 240
  241 RENQSKLAFL FGIDDHWGPL QLFEEISKQA PHTSLSIERG GHTHGFCCTV AGSAWVAQHV 300
  301 ATLIKNRFSQ LQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	158	0.73
Transmembrane Helix	159	182	0.68
Cytoplasmic	183	312	0.54