YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21536953
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ AIHKPLKKQD SLLSISVPFL QKLMAEVLGT  60
   61 YFLIFAGCAA VAVNTQHDKA VTLLGIAIVW GLTVMVLVYS LGHISGAHFN PAVTIAFASC 120
  121 GRFPLKQVPA YVISQVIGST LAAATLRLLF GLDQDVCSGK HDVFVGTLPS GSNLQSFVIE 180
  181 FIITFYLMFV ISGVATDNRA IGELAGLAVG STVLLNVIIA GPVSGASMNP GRSLGPAMVY 240
  241 SCYRGLWIYI VSPIVGAVSG AWVYNMVRYT DKPLREITKS GSFLKTVRNG SSR

Type	Start	End	Confidence
Cytoplasmic	1	52	0.76
Transmembrane Helix	53	73	0.87
Non-Cytoplasmic	74	80	0.55
Transmembrane Helix	81	107	0.79
Cytoplasmic	108	127	0.65
Transmembrane Helix	128	150	0.73
Non-Cytoplasmic	151	173	0.91
Transmembrane Helix	174	195	0.89
Cytoplasmic	196	203	0.80
Transmembrane Helix	204	226	0.90
Non-Cytoplasmic	227	244	0.91
Transmembrane Helix	245	266	0.93
Cytoplasmic	267	293	0.95