YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABA4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSSFISQP LSSSLSVMKR NVSAKRSELC LDSSKIRLDH RWSFIGGSRI SVQSNSYTVV  60
   61 HKKFSGVRAS WLTTTQIASS VFAVGTTAVL PFYTLMVVAP KAEITKKCME SSVPYIILGV 120
  121 LYVYLLYISW TPETLKYMFS SKYMLPELSG IAKMFSSEMT LASAWIHLLV VDLFAARQVY 180
  181 NDGLENQIET RHSVSLCLLF CPVGIVSHFV TKAIINNQYK

Type	Start	End	Confidence
Cytoplasmic	1	71	0.63
Transmembrane Helix	72	95	0.80
Non-Cytoplasmic	96	110	0.52
Transmembrane Helix	111	131	0.87
Cytoplasmic	132	150	0.50
Transmembrane Helix	151	176	0.68
Non-Cytoplasmic	177	191	0.51
Transmembrane Helix	192	211	0.82
Cytoplasmic	212	220	0.50