YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IAR1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	105	0.97
Transmembrane Helix	106	131	0.90
Cytoplasmic	132	140	0.87
Transmembrane Helix	141	161	0.93
Non-Cytoplasmic	162	197	0.94
Transmembrane Helix	198	217	0.89
Cytoplasmic	218	385	0.86
Transmembrane Helix	386	407	0.94
Non-Cytoplasmic	408	415	0.63
Transmembrane Helix	416	435	0.93
Cytoplasmic	436	447	0.61
Transmembrane Helix	448	468	0.92
Non-Cytoplasmic	469	469	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSLRKLLV PILVLVLFLD LCVESGFSQS TPARDDHVHH HGGGCSHSHD HDHDHDHDHH  60
   61 VKKTTAKVEM KLPEELAEEE DMRLCGFGPC LHDHDHESSS TLTGFALWLN ALGCSLLVSL 120
  121 ASLICLVLLP IMFVQGKPSK WFVDSLALFG AGAMLGDAFL HQLPHAFGGG HSHSNDHHEN 180
  181 HDHHDHSHSD SPSHSHSIQD LSVGLSVLAG IVVFLLVEKL VRYVEENSSG SNTWGHHHHH 240
  241 HHAGSKKLKD EGDHNNLDQQ SSSDAIVNSS EKVSGGSTDK SLRKRKTSAS DATDKSDSGT 300
  301 EITSDGKSDK PEQVETRSSS LVFGYLNLFS DGVHNFTDGM ALGSAFLIYG SVGGWSRTMF 360
  361 LLAHELPQEI GDFGILVRSG FTVTKALFFN FLSALVALAG TALVLVWGNE PGQSSLIEGF 420
  421 TAGGFIYIAV AGVLAEMNNS GKSTLKNSAC HLISLILGMS VALCISLIE