YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21536709
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRV GANKFPERQP IGTSAQSDDY KEPPPAPLFE PGELASWSFW RAGIAEFIAT  60
   61 FLFLYITVLT VMGVKRSPNM CASVGIQGIA WAFGGMIFAL VYCTAGISGG HINPAVTFGL 120
  121 FLARKLSLTR AVYYIVMQCL GAICGAGVVK GFQPKQYQAL GGGANTIAHG YTKGSGLGAE 180
  181 IIGTFVLVYT VFSATDAKRN ARDSHVPILA PLPIGFAVFL VHLATIPITG TGINPARSLG 240
  241 AAIIFNKDNA WDDHWVFWVG PFIGAALAAL YHVIVIRTIP FKSRS

Type	Start	End	Confidence
Cytoplasmic	1	48	0.83
Transmembrane Helix	49	73	0.82
Non-Cytoplasmic	74	88	0.75
Transmembrane Helix	89	112	0.86
Cytoplasmic	113	130	0.72
Transmembrane Helix	131	152	0.90
Non-Cytoplasmic	153	173	0.87
Transmembrane Helix	174	193	0.90
Cytoplasmic	194	205	0.86
Transmembrane Helix	206	226	0.89
Non-Cytoplasmic	227	254	0.89
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	285	0.89