YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21536619, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATTTLSS SSSSPSLTLI NASHRFVSVT PFSSNSIFLR RRFRRLNRSL ASSSSHSRRR  60
   61 YESDDRFFGG GDNYDVVPDD DGFSDDDDEE DERESSVDLL IRFLRSMFKK VSKRAKKASR 120
  121 RILPAAMSPR LVSFAVDGIL LLGSLSITRA FLEVICNLGG TVFTVILLIR LFWAAASFFQ 180
  181 TYGNSFGPNP VN

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.44
Transmembrane Helix	21	39	0.42
Cytoplasmic	40	125	0.79
Transmembrane Helix	126	147	0.66
Non-Cytoplasmic	148	149	0.44
Transmembrane Helix	150	174	0.79
Cytoplasmic	175	192	0.58