YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSTR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	26	0.82
Non-Cytoplasmic	27	36	0.85
Transmembrane Helix	37	57	0.90
Cytoplasmic	58	76	0.88
Transmembrane Helix	77	96	0.79
Non-Cytoplasmic	97	104	0.72
Transmembrane Helix	105	125	0.80
Cytoplasmic	126	131	0.88
Transmembrane Helix	132	152	0.66
Non-Cytoplasmic	153	164	0.67
Transmembrane Helix	165	188	0.85
Cytoplasmic	189	195	0.75
Transmembrane Helix	196	217	0.63
Non-Cytoplasmic	218	237	0.61
Transmembrane Helix	238	258	0.94
Cytoplasmic	259	264	0.60
Transmembrane Helix	265	286	0.89
Non-Cytoplasmic	287	291	0.51
Transmembrane Helix	292	310	0.89
Cytoplasmic	311	340	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATPWYFVA VLLTILTSSQ GILTTLSQSD GGYKYDYATV PFLAEVFKLI ISGLFLWREM  60
   61 RTSSSTTSRI TTDWKSVRLF VIPSLIYLIH NNVQFATLTY VDTSTYQIMG NLKIVTTGIL 120
  121 FRLFLKRKLS KLQWMAIGLL AVGTTTSQVK GCGEASCDSL FTAPIQGYLL GILSAGLSAL 180
  181 AGIYTEFLMK RNNDTLYWQN LQLYTFGSLF NVARLIADDF RHGFEKGPWW QRIFDGYSIT 240
  241 TWLVVLNLGS TGLLVSWLMK YADNIVKVYS TSMAMLLTMV ASIYLFSFKP TLQLFLGIVI 300
  301 CIMSLHMYFA PPHTLVDLPV TNEAHAKTLK QVVVEEKTDS