YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6137140, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.84
Transmembrane Helix	105	127	0.74
Non-Cytoplasmic	128	140	0.84
Transmembrane Helix	141	162	0.90
Cytoplasmic	163	169	0.93
Transmembrane Helix	170	191	0.90
Non-Cytoplasmic	192	197	0.81
Transmembrane Helix	198	219	0.93
Cytoplasmic	220	227	0.85
Transmembrane Helix	228	246	0.93
Non-Cytoplasmic	247	255	0.68
Transmembrane Helix	256	274	0.94
Cytoplasmic	275	283	0.78
Transmembrane Helix	284	304	0.90
Non-Cytoplasmic	305	318	0.83
Transmembrane Helix	319	341	0.84
Cytoplasmic	342	346	0.79
Transmembrane Helix	347	369	0.85
Non-Cytoplasmic	370	375	0.75
Transmembrane Helix	376	397	0.89
Cytoplasmic	398	415	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKAIATSL GGDRVLIFPC SPRSSFVFTS RLSSLPLKRA SIGGAVSCSG VNGLTRWNSI  60
   61 VSTRRLVPVR SINSESDSDS DFPHENQQGN PGLGKFKEYQ EWDSWTAKFS GGANIPFLML 120
  121 QLPQIILNTQ NLLAGNNTAL SAVPWLGMLT GLLGNLSLLS YFAKKREKEA AVVQTLGVVS 180
  181 THIVLAQLTM AEAMPIQYFV ATSAVVTIGL IVNCLYYFGK LSKTVWQLWE DVITIGGLSV 240
  241 LPQIMWSTFV PLVPNSILPG TTAFGIAVAA IIMARTGKLS EKGVRFVGSL SGWTATLMFM 300
  301 WMPVSQMWTN FLNPDNIKGL SSITMLLSMM GNGLMIPRAL FIRDLMWLTG SLWATLFYGY 360
  361 GNILCLYLVN CTSQSFFVAA TIGLISWIGL ALWRDAVAYG HNSPFRSLKE LVFGP