YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74225105, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPMELFCW SGGWGLPSVD LDSLAVLTYT RFTGAPLKIH KTSNPWQSPS GTLPALRTSD  60
   61 GKVITVPHKI ITHLRKEKYN ADYDLSARQG ADTLAFMSLL EEKLLPVLIH TFWIDAKNYV 120
  121 EVTRKWYAEA MPFPLNFFLP GRMQRQYMER LQLLCGEHKS ENEEELEKEL YQEARECLTL 180
  181 LSQRLGSQKF FFGDAPASLD AFVFSHLALL LQAKLPSGKL QAHLRGLHNL CAYCTHILNL 240
  241 YFPRDGDEVP LPRQTPAAPE TEEEPYRRRT QILSVLAGLA AMVGYALLSG IVSIQRTSPA 300
  301 RAPGTRALGL AEEDEED

Type	Start	End	Confidence
Non-Cytoplasmic	1	271	0.63
Transmembrane Helix	272	294	0.86
Cytoplasmic	295	317	0.49