YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34525910
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGSHSQSQA ASRRRRCGWL LPLLVGVAFV GEIAFLGRLD MSKNAAAVES WTTSFYRLSS  60
   61 TWGADAPPGS GDDDDECEER LEREDAVPYD RDFERDPVLV GGAAKDWNRC SVGCEFGFPA 120
  121 SKTPDATFGI APDPSVESIL RSMESSQYYS ENNINAARGR GYQIVMTTSL SSDVPVGYFS 180
  181 WAEYDIMAPV PPKTEEALAA AFISNCGARN FRLQALEMLE SLDVKIDSYG SCHRNRDGKV 240
  241 DKVETLKRYK FSLAFENSGE EDYVTEKFFQ SLVTGAIPVV VGAPNIQEFS PGEGAILHIK 300
  301 ELDDVISVAK TMKHIASNPD AFNQSLRWKY DGPSDSFKAL IDMAAVHSSC RLCIHIATKI 360
  361 HEKEERTPKF MNRSCSCSSK RGTVYHLFVR ERGRFKTESI YLRSDQLTLG ALESAVHGKF 420
  421 RSLKHVPVWK DERPSSIRGG DELKVYKIYP IGLTERQALY KFQFSDDAEV ARYIKGHPCA 480
  481 KLEVIFV

Type	Start	End	Confidence
Cytoplasmic	1	16	0.58
Transmembrane Helix	17	35	0.56
Non-Cytoplasmic	36	487	0.99