YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6009797, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYVHFMMDK KMKFDTLNAK IGIIGLGYVG LPLAVEFGKK VTTIGFDINK SRIDELRNGH  60
   61 DSTLECSNLE LLEATKLTYA CSLDALKECN VFIVTVPTPI DKHKQPDLTP LIKASETLGK 120
  121 IIKKGDVIIY ESTVYPGATE EDCIPVVEKV SGLKFNIDFF AGYSPERINP GDKEHRVTNI 180
  181 LKVTSGSTPD VAEYVDQLYK LIITVGTHKA SSIKVAEAAK VIENTQRDVN IALINELSII 240
  241 FNKLGIDTLE VLEAAGTKWN FLPFRPGLVG GHCIGVDPYY LTHKAQSVGY HPEMILAGRR 300
  301 LNDSMGQYVV SQLVKKMLKQ RIQVEGANVL VMGLTFKENC PDLRNTKVID IISELKEYNI 360
  361 NIDIIDPWCS TDEAQHEYGL TLCEDPKVNH YDAIIIAVAH NEFREMGESA IRALGKDEHV 420
  421 LFDLKYVLDK KSIDMRL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.56
Transmembrane Helix	16	35	0.53
Non-Cytoplasmic	36	437	0.99