YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP2DQ_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLVGDDLW AVVIFTAIFL LLVDLVHRRQ RWTACYPPGP VPFPGLGNLL QVDFENIPYS  60
   61 FYKLQNRYGN VFSLQMAWKP VVVVNGLKAV RELLVTYGED TSDRPLMPIY NHIGYGHKSK 120
  121 GVILAPYGPE WREQRRFSVS TLRDFGLGKK SLEQWVTEEA GHLCDAFTKE AEHPFNPSPL 180
  181 LSKAVSNVIA SLIYARRFEY EDPFFNRMLK TLKESLGEDT GFVGEVLNAI PMLLHIPGLP 240
  241 DKAFPKLNSF IALVNKMLIE HDLTWDPAQP PRDLTDAFLA EVEKAKGNPE SSFNDKNLRI 300
  301 VVIDLFMAGM VTTSTTLSWA LLLMILHPDV QRRVHQEIDE VIGHVRHPEM ADQARMPYTN 360
  361 AVIHEVQRFA DIVPTNLPHM TSRDIKFQDF FIPKGTTLIP NLSSVLKDET VWEKPLRFYP 420
  421 EHFLDAQGHF VKHEAFMPFS AGRRSCLGEP LARMELFLFF TCLLQRFSFS VPDGQPRPSD 480
  481 YGIYTMPVTP EPYQLCAVAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.81
Transmembrane Helix	8	27	0.85
Cytoplasmic	28	300	0.83
Transmembrane Helix	301	326	0.78
Non-Cytoplasmic	327	500	0.84