YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12653567
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSGNPGAE VTNSSVAGPD CCGGLGNIDF RQADFCVMTR LLGYVDPLDP SFVAAVITIT  60
   61 FNPLYWNVVA RWEHKTRKLS RAFGSPYLAC YSLSITILLL NFLRSHCFTQ AMLSQPRMES 120
  121 LDTPAAYSLG LALLGLGVVL VLSSFFALGF AGTFLGDYFG ILKEARVTVF PFNILDNPMY 180
  181 WGSTANYLGW AIMHASPTGL LLTVLVALTY IMALLYEEPF TAEIYRQKAS GSHKRS

Type	Start	End	Confidence
Cytoplasmic	1	47	0.56
Transmembrane Helix	48	66	0.72
Non-Cytoplasmic	67	82	0.48
Transmembrane Helix	83	108	0.75
Cytoplasmic	109	124	0.58
Transmembrane Helix	125	151	0.84
Non-Cytoplasmic	152	189	0.60
Transmembrane Helix	190	216	0.81
Cytoplasmic	217	236	0.81