YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37591104, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGRARALR QFTLSTGKSA GRNSSGRITV FHRGGGSKRL LRRIDLKRST SSMGIVESIE  60
   61 YDPNRSSQIA LVRWIKGGCQ KKMNTIEELA PPRKILEPTT NTISGLFSFS FLPGKVDQRK 120
  121 VACFSPGLMA AYVVVGLPTG MPPLSSYKSA FASKGAGSTK TLVKDVFFSA FSSPKAKRET 180
  181 ASLAFASSFG FPRIAVAGVP TAFFAPRMRQ KVRGKSTFSL CEVRKWRTHS ILWAHRIKGK 240
  241 AGLSWQSFRR QDTLGLVGAA GHNKSKPKTD QGSLPAKPIG ERAKQLKALR GLRAKDGACK 300
  301 VDRAPVTYII ASHQLEAGKM VMNCDWSKPS TSSFSQSAQN DHPKPLFTV

Type	Start	End	Confidence
Cytoplasmic	1	120	0.61
Transmembrane Helix	121	141	0.51
Non-Cytoplasmic	142	188	0.85
Transmembrane Helix	189	205	0.59
Cytoplasmic	206	349	0.54